DIYA: A Bacterial Annotation Pipeline for any Genomics Lab

reportActive / Technical Report | Accession Number: ADA532907 | Open PDF

Abstract:

Summary DIYA Do-It-Yourself Annotator is a modular and configurable open source pipeline software, written in Perl, used for the rapid annotation of bacterial genome sequences. The software is currently used to take DNA contigs as input, either in the form of complete genomes or the result of shotgun sequencing, and produce an annotated sequence in Genbank file format as output.

Author(s):
Stewart, Andrew C. ; Osborn, Brian ; Read, Timothy D.
Author Organization(s):
NAVAL MEDICAL RESEARCH CENTER SILVER SPRING MD BIOLOGICAL DEFENSE RESEARCH DIRECTORATE
Descriptive Note:
Journal article
Supplementary Note:
Pub. in Bioinformatics Applications Note, v25 n7, p962-963, 2009.
Pagination:
0003

Security Markings

DOCUMENT & CONTEXTUAL SUMMARY

Distribution:
Approved For Public Release
Distribution Statement:
Approved For Public Release; Distribution Is Unlimited.

RECORD

Collection: TR
Identifying Numbers
Monitor Series:
DTRA
 Subject Terms
Joint Capability Areas:
JCA_3.2_Engagement; JCA_3_Force Application; JCA_5_Command and Control; JCA_3.2.1_Kinetic Means; JCA_5.3_Planning; JCA_8_Building Partnerships; JCA_6.4.1_Secure Information Exchange; JCA_6_Net Centric; JCA_7.1.2_Prevent Non-kinetic Attack; JCA_7.1_Prevent; JCA_7_Protection; JCA_8.2_Shape
Communities of Interest:
No COI(s) Identified
Descriptor(s):
*DEOXYRIBONUCLEIC ACIDS, *BACTERIA, *GENOME, GENES, PIPELINES, COMPUTER PROGRAMS, SEQUENCES
Field(s)/Group(s):
Biochemistry, Microbiology
Keyword(s):
DIYA(DO IT YOURSELF ANNOTATOR)
Report Date:
2009 Feb 12
Creation Date:
2010 Dec 29